species:   Scscl
pid:       PID1722
parent:    Ssc-milR-198
paralog:   
locus:     NW_001820833.1:2373003-2373094
matures:   ['UUUUUUUUUUUUUUUUUUUUUUU', 'GGAAAGAAGAGGAAGGAAAAGCA']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820833.1:2373003-2373094

4 out of bounds
11 alignments
10 proper strand
9 stranded perfect matches

                  ***********************              ***********************              
GCAUGCUUGUUUUUUUUUUUUUUUUUUUUUUUUUUUUAAUGAAAGAAAAGGGAAAGAUGAAAGAGAGGAAAGAAGAGGAAGGAAAAGCAGCC
....(((.(((((((((((((((((((((((((((((.((................)).)))))))))))))))))))))))))))))))).
---------UUUUUUUUUUUUUUUUUUUUUUU------------------------------------------------------------ l=23 a=0 c
------------------------------------------------------------------GGAAAGAAGAGGAAGGAAAAGCA--- l=23 a=0 c*
---------------------------------------------------------UGAAAGAGAGGAAAGAAGAGG-------------- l=21 a=3 ma
--------------------UUUUUUUUUUUUUUUUUAAUG--------------------------------------------------- l=21 a=0 ma*

---------------------------------------------------------UGAAAGAGAGGAAAGAAGAGG-------------- l=21 a=3 (ma)
----------------------------------------GAAAGAAAAGGGAAAGAU---------------------------------- l=18 a=1 
---------------------------------------UGAAAGAAAAGGGAAAGAUGAAA------------------------------ l=23 a=1 
------------------------------------UAAUGAAAGAAAAGGGAAAGAU---------------------------------- l=22 a=1 
-----------------------------------UUAAUGAAAGAAAAGGGAAAG------------------------------------ l=21 a=1 
--------------------------------UUUUUAAUaAAAGAAAAGGGAA-------------------------------------- l=22 a=1 
-------------------------------UUUUUUAAUGAAAGAAAAGGGA--------------------------------------- l=22 a=1 
------------------------------UUUUUUUAAUGAAAGAAAAGGG---------------------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
